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Experience
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2024 Barcelona Spain
Schmidt Science Fellow
Barcelona Supercomputing Center - Centro Nacional de Supercomputación -
2023 Barcelona, Spain
Postdoctoral Researcher
Barcelona Supercomputing Center - Centro Nacional de Supercomputación -
2023 Hinxton, UK
Postdoctoral Researcher
Wellcome Trust Sanger Institute -
2018-2019 Salt Lake City
UT, USAResearch Associate
University of Utah, Department of Dermatology -
2018-2019 Salt Lake City
UT, USAResearch Associate
University of Utah, Huntsman Cancer Institute -
2016-2017 Bozeman
MT, USAResearch Associate (Industry)
Takeda Pharmaceuticals -
2015-2016 Bozeman
MT, USAResearch Assistant (Industry)
Montana Molecular -
2014-2015 Portland
OR, USAResearch Assistant
Lewis & Clark College -
2013-2015 Portland
OR, USAResearch Assistant
Vollum Institute, Oregon Health & Sciences University
Education
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2019-2023 PhD in Pathogen Genomics & Epidemiology
University of Cambridge (Cambridge, UK) & Wellcome Trust Sanger Institute (Hinxton, UK) - Awarded with no corrections
- Supervisors: Professor Stephen Bentley & Professor Henrik Salje
- Thesis Title: Geographic Migration and Evolution of *Streptococcus pneumoniae*
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2017-2018 MSc. in Medical Microbiology with Distinction
London School of Hygiene and Tropical Medicine (London, UK & Fajara, The Gambia) - Supervisors: Professor Martin Antonio & Dr. Madikay Senghore
- Dissertation Title: Towards understanding genomic drivers of antimicrobial resistance in Mycobacterium tuberculosis genomes from Ghana and Togo
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2011-2015 Bachelors in Biology (minor in neuroscience)
Lewis and Clark College (Oregon, USA)
Invited talks and Presentations
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March 2024 Cape Town, South Africa
Plenary
- Advances in Pneumococcal Genomics and Patterns of Geographical Migration of Pneumococcal Strains
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November 2023 Bologna, Italy
Oral Presentation
- Estimating Between Country Migration of the Global Opportunistic Pathogen Streptococcus pneumoniae
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May 2023 Crete, Greece
Poster
- Estimating Between Country Pneumococcal Migration
- (As a conference host I was ineligible for an oral presentation)
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May 2023 Hinxton, UK
Poster
- Estimating Between Country Pneumococcal Migration
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April 2023 BSC-CNS
Barcelona, SpainSeminar
- Using genomic and human mobility data to elucidate the long-range migration of Streptococcus pneumoniae
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December 2022 St. Johns College
Cambridge, UKPoster
- Elucidating pneumococcal spatiotemporal dynamics in South Africa using genetic and human mobility data
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May 2022 University of Columbia
NYC, USASeminar
- Migration of the pneumococcus: Using genomic and human mobility data to elucidate the long-range migration of Streptococcus pneumoniae
- Invited by Professor Sen Pei at the Mailman School of Public Health
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June 2022 Toronto, Canada
Oral Presentation
- Geographic Migration and Fitness Dynamics of Streptococcus pneumoniae
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May 2022 Liverpool, UK
Oral Presentation
- Geographic Migration and Fitness Dynamics of Streptococcus pneumoniae
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June 2021 Virtual
Poster
- Elucidating the Spatiotemporal Dynamics of Streptococcus pneumoniae in South Africa
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November 2020 Virtual
Oral Presentation
- 8th International Conference on Infectious Disease Dynamics, Epidemics 8.
- Pneumococcal Spatiotemporal Dynamics in South Africa
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May 2020 Virtual
Poster
- Delineating the Perturbation by PCV13 in Composition of Streptococcus pneumoniae carriage isolates in Cambodia
- International Symposium on Pneumococci and Pneumococcal Diseases, 2020
Conferences hosted & Organised
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Scientific Committee Member | Europneumo 2024
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May 2023 Crete, GR
Travel Bursary Initiation and Management for Europneumo 16
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May 2023 Crete, GR
Conference Host for the 16th European Meeting on the Pneumococcus
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October 2021 Wellcome Sanger
Institute (UK)Symposium Organiser for Microbial Genomics Symposium
Teaching Experience
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Spring 2023 Course Organiser - MPhil Population Health Sciences
School of Public Health, University of Cambridge, UK -
Autumn 2022 Supervisor - Pre-Doctoral Internship
European Bioinformatics Institute, Hinxton, UK - Project: Using Mutational Spectra to identify historical niche of the pneumococcus
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June 2022 Instructor - Bioinformatics Workshop
ISPPD pre-conference workshop on bioinformatic methods for analysing pathogen genome data -
Spring 2022 Lecturer - MPhil Population Health Sciences
School of Public Health, University of Cambridge, UK -
February 2022 Instructor - Pathogen Genomics Advanced Courses
Wellcome Connecting Sciences, Latin America & Cambridge, UK - Week intensive course introducing Latin American microbiologists to computational tools to enable analysis of their genomic and transcriptomic data
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February 2021
& 2022Instructor - Pathogen Genomics
Department of Medical Genetics, University of Cambridge, UK - MPhil in Genomic Medicine
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Spring 2020
& 2021Instructor - Pathogen Genomics
London School of Hygiene and Tropical Medicine - MSc Module
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Autumn 2021 Supervisor - PhD Project
Wellcome Sanger Institute, Hinxton, UK - Project: Using Genome Variation Data to Measure Spatial Spread of Streptococcus Pneumoniae in Israel. Output: Presented Abstract, ISPPD 2022. Toronto, Canada; Paper in Preparation
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May 2021 Lecturer - Phylodynamics Masterclass
University of Cambridge, UK - Presented a phylodynamics masterclass to high-school students interested in studying biology at the University of Cambridge.
Research Visits
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October 2022 Probabilistic Inference Laboratory, University of Oslo
- I visited the Probabilistic Inference Laboratory led by Professor Jukka Corander at the University of Oslo for 5 weeks in Autumn 2022. I undertook training on developing likelihood-free inference methods with the developers of the Engine for Likelihood-Free Inference.
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Summer 2018 Medical Research Council, The Gambia
- I undertook my MSc dissertation
Recognition and Awards
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March 2024 Robert Austrian Research Award in Pneumococcal Vaccinology 2024
- Awarded to Investiage the compound effects of air quality, meteorology, and pathogen population genetics on pneumococcal disease in a Bayesian Hierarchical Framework.
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July 2023 Doctoral Thesis Awarded with no corrections
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2023 Bill & Melinda Gates Foundation Conference Support Travel Bursary Grant
- Award: $50,000 I was awarded this grant to provide funding for registration and travel for 20 early career researchers from GAVI eligible countries to attend Europneumo 16. Link to Europneumo 16
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June 2022 Young Investigator Award Nominee for Oral Presentation
- 12th International Symposium on Pneumococci and Pneumococcal Diseases. Geographic Migration and Fitness Dynamics of Streptococcus pneumoniae
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2019-2023 Wellcome Sanger Institute 4 Year PhD Studentship
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September 2018 MSc Dissertation awarded with Distinction
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Summer 2013 Miller Internship Award
- Award: $4600. Underwrites expenses of students at Lewis & Clark College who are engaged in scientific research internships in the mathematical and natural sciences. Sponsoring Institution: Oregon Health and Sciences University.