cv

Experience

  • 2024

    Barcelona Spain

    Schmidt Science Fellow
    Barcelona Supercomputing Center - Centro Nacional de Supercomputación
  • 2023

    Barcelona, Spain

    Postdoctoral Researcher
    Barcelona Supercomputing Center - Centro Nacional de Supercomputación
  • 2023

    Hinxton, UK

    Postdoctoral Researcher
    Wellcome Trust Sanger Institute
  • 2018-2019

    Salt Lake City
    UT, USA

    Research Associate
    University of Utah, Department of Dermatology
  • 2018-2019

    Salt Lake City
    UT, USA

    Research Associate
    University of Utah, Huntsman Cancer Institute
  • 2016-2017

    Bozeman
    MT, USA

    Research Associate (Industry)
    Takeda Pharmaceuticals
  • 2015-2016

    Bozeman
    MT, USA

    Research Assistant (Industry)
    Montana Molecular
  • 2014-2015

    Portland
    OR, USA

    Research Assistant
    Lewis & Clark College
  • 2013-2015

    Portland
    OR, USA

    Research Assistant
    Vollum Institute, Oregon Health & Sciences University

Education

  • 2019-2023
    PhD in Pathogen Genomics & Epidemiology
    University of Cambridge (Cambridge, UK) & Wellcome Trust Sanger Institute (Hinxton, UK)
    • Awarded with no corrections
    • Supervisors: Professor Stephen Bentley & Professor Henrik Salje
    • Thesis Title: Geographic Migration and Evolution of *Streptococcus pneumoniae*
  • 2017-2018
    MSc. in Medical Microbiology with Distinction
    London School of Hygiene and Tropical Medicine (London, UK & Fajara, The Gambia)
    • Supervisors: Professor Martin Antonio & Dr. Madikay Senghore
    • Dissertation Title: Towards understanding genomic drivers of antimicrobial resistance in Mycobacterium tuberculosis genomes from Ghana and Togo
  • 2011-2015
    Bachelors in Biology (minor in neuroscience)
    Lewis and Clark College (Oregon, USA)

Invited talks and Presentations

  • March 2024

    Cape Town, South Africa

    Plenary
    • Advances in Pneumococcal Genomics and Patterns of Geographical Migration of Pneumococcal Strains
  • November 2023

    Bologna, Italy

    Oral Presentation
    • Estimating Between Country Migration of the Global Opportunistic Pathogen Streptococcus pneumoniae
  • May 2023

    Crete, Greece

    Poster
    • Estimating Between Country Pneumococcal Migration
    • (As a conference host I was ineligible for an oral presentation)
  • May 2023

    Hinxton, UK

    Poster
    • Estimating Between Country Pneumococcal Migration
  • April 2023

    BSC-CNS
    Barcelona, Spain

    Seminar
    • Using genomic and human mobility data to elucidate the long-range migration of Streptococcus pneumoniae
  • December 2022

    St. Johns College
    Cambridge, UK

    Poster
    • Elucidating pneumococcal spatiotemporal dynamics in South Africa using genetic and human mobility data
  • May 2022

    University of Columbia
    NYC, USA

    Seminar
    • Migration of the pneumococcus: Using genomic and human mobility data to elucidate the long-range migration of Streptococcus pneumoniae
    • Invited by Professor Sen Pei at the Mailman School of Public Health
  • June 2022

    Toronto, Canada

    Oral Presentation
    • Geographic Migration and Fitness Dynamics of Streptococcus pneumoniae
  • May 2022

    Liverpool, UK

    Oral Presentation
    • Geographic Migration and Fitness Dynamics of Streptococcus pneumoniae
  • June 2021

    Virtual

    Poster
    • Elucidating the Spatiotemporal Dynamics of Streptococcus pneumoniae in South Africa
  • November 2020

    Virtual

    Oral Presentation
    • 8th International Conference on Infectious Disease Dynamics, Epidemics 8.
    • Pneumococcal Spatiotemporal Dynamics in South Africa
  • May 2020

    Virtual

    Poster
    • Delineating the Perturbation by PCV13 in Composition of Streptococcus pneumoniae carriage isolates in Cambodia
    • International Symposium on Pneumococci and Pneumococcal Diseases, 2020

Conferences hosted & Organised

  • Scientific Committee Member | Europneumo 2024
  • May 2023

    Crete, GR

    Travel Bursary Initiation and Management for Europneumo 16
  • May 2023

    Crete, GR

    Conference Host for the 16th European Meeting on the Pneumococcus
  • October 2021

    Wellcome Sanger
    Institute (UK)

    Symposium Organiser for Microbial Genomics Symposium

Teaching Experience

  • Spring 2023
    Course Organiser - MPhil Population Health Sciences
    School of Public Health, University of Cambridge, UK
  • Autumn 2022
    Supervisor - Pre-Doctoral Internship
    European Bioinformatics Institute, Hinxton, UK
    • Project: Using Mutational Spectra to identify historical niche of the pneumococcus
  • June 2022
    Instructor - Bioinformatics Workshop
    ISPPD pre-conference workshop on bioinformatic methods for analysing pathogen genome data
  • Spring 2022
    Lecturer - MPhil Population Health Sciences
    School of Public Health, University of Cambridge, UK
  • February 2022
    Instructor - Pathogen Genomics Advanced Courses
    Wellcome Connecting Sciences, Latin America & Cambridge, UK
    • Week intensive course introducing Latin American microbiologists to computational tools to enable analysis of their genomic and transcriptomic data
  • February 2021
    & 2022
    Instructor - Pathogen Genomics
    Department of Medical Genetics, University of Cambridge, UK
    • MPhil in Genomic Medicine
  • Spring 2020
    & 2021
    Instructor - Pathogen Genomics
    London School of Hygiene and Tropical Medicine
    • MSc Module
  • Autumn 2021
    Supervisor - PhD Project
    Wellcome Sanger Institute, Hinxton, UK
    • Project: Using Genome Variation Data to Measure Spatial Spread of Streptococcus Pneumoniae in Israel. Output: Presented Abstract, ISPPD 2022. Toronto, Canada; Paper in Preparation
  • May 2021
    Lecturer - Phylodynamics Masterclass
    University of Cambridge, UK
    • Presented a phylodynamics masterclass to high-school students interested in studying biology at the University of Cambridge.

Research Visits

  • October 2022
    Probabilistic Inference Laboratory, University of Oslo
    • I visited the Probabilistic Inference Laboratory led by Professor Jukka Corander at the University of Oslo for 5 weeks in Autumn 2022. I undertook training on developing likelihood-free inference methods with the developers of the Engine for Likelihood-Free Inference.
  • Summer 2018
    Medical Research Council, The Gambia
    • I undertook my MSc dissertation

Recognition and Awards

  • March 2024
    Robert Austrian Research Award in Pneumococcal Vaccinology 2024
    • Awarded to Investiage the compound effects of air quality, meteorology, and pathogen population genetics on pneumococcal disease in a Bayesian Hierarchical Framework.
  • July 2023
    Doctoral Thesis Awarded with no corrections
  • 2023
    Bill & Melinda Gates Foundation Conference Support Travel Bursary Grant
    • Award: $50,000 I was awarded this grant to provide funding for registration and travel for 20 early career researchers from GAVI eligible countries to attend Europneumo 16. Link to Europneumo 16
  • June 2022
    Young Investigator Award Nominee for Oral Presentation
    • 12th International Symposium on Pneumococci and Pneumococcal Diseases. Geographic Migration and Fitness Dynamics of Streptococcus pneumoniae
  • 2019-2023
    Wellcome Sanger Institute 4 Year PhD Studentship
  • September 2018
    MSc Dissertation awarded with Distinction
  • Summer 2013
    Miller Internship Award
    • Award: $4600. Underwrites expenses of students at Lewis & Clark College who are engaged in scientific research internships in the mathematical and natural sciences. Sponsoring Institution: Oregon Health and Sciences University.